Particulate methane monooxygenase from Methylococcus capsulatus (BATH)
Organism: Methylococcus capsulatus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02461
PDB ID: 3RGB
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.0 Å
Number of TM segments = 33
Sequence positions:
A: 194-208|232-246
C: 49-63|96-110|136-150|179-192|208-221
B: 23-40|66-80|85-99|221-239
E: 193-207|233-246
G: 50-64|95-109|136-151|178-192|209-221
F: 23-40|66-80|85-99|221-239
I: 193-207|233-247
K: 49-64|96-110|136-151|178-192|209-221
J: 23-41|65-80|85-99|221-239
Tilt angles:
A - Segment: 194-208 - Tilt: 11.0°
A - Segment: 232-246 - Tilt: 9.1°
C - Segment: 49-63 - Tilt: 11.1°
C - Segment: 96-110 - Tilt: 5.1°
C - Segment: 136-150 - Tilt: 24.7°
C - Segment: 179-192 - Tilt: 18.0°
C - Segment: 208-221 - Tilt: 8.1°
B - Segment: 23-40 - Tilt: 45.1°
B - Segment: 66-80 - Tilt: 19.9°
B - Segment: 85-99 - Tilt: 32.3°
B - Segment: 221-239 - Tilt: 41.8°
E - Segment: 193-207 - Tilt: 8.4°
E - Segment: 233-246 - Tilt: 11.9°
G - Segment: 50-64 - Tilt: 6.4°
G - Segment: 95-109 - Tilt: 15.0°
G - Segment: 136-151 - Tilt: 12.8°
G - Segment: 178-192 - Tilt: 14.7°
G - Segment: 209-221 - Tilt: 15.5°
F - Segment: 23-40 - Tilt: 44.0°
F - Segment: 66-80 - Tilt: 18.9°
F - Segment: 85-99 - Tilt: 34.1°
F - Segment: 221-239 - Tilt: 40.4°
I - Segment: 193-207 - Tilt: 9.8°
I - Segment: 233-247 - Tilt: 3.4°
K - Segment: 49-64 - Tilt: 13.2°
K - Segment: 96-110 - Tilt: 6.5°
K - Segment: 136-151 - Tilt: 14.1°
K - Segment: 178-192 - Tilt: 13.0°
K - Segment: 209-221 - Tilt: 13.6°
J - Segment: 23-41 - Tilt: 37.1°
J - Segment: 65-80 - Tilt: 9.2°
J - Segment: 85-99 - Tilt: 32.3°
J - Segment: 221-239 - Tilt: 42.3°
Structural assessment:
MAIDEN score = -193.4329
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]