Particulate methane monooxygenase from Methylococcus capsulatus (BATH)
Organism: Methylococcus capsulatus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02461
PDB ID: 3RGB
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.0 Å
Number of TM segments = 40
Sequence positions:
A: 160-173|202-217
C: 605-619|652-666|692-707|733-747|765-777|781-786
B: 399-417|440-453|462-475|499-513|516-532|573-593
E: 974-989|1012-1026
G: 2231-2245|2276-2290|2318-2333|2358-2373|2391-2403|2407-2412
F: 1812-1829|1854-1868|1874-1888|1989-2006
I: 1353-1367|1398-1412
K: 2021-2035|2061-2075|2108-2122|2143-2158|2180-2190|2194-2198
J: 1597-1615|1635-1648|1657-1674|1693-1706|1711-1727|1768-1785
Tilt angles:
A - Segment: 160-173 - Tilt: 4.1°
A - Segment: 202-217 - Tilt: 9.1°
C - Segment: 605-619 - Tilt: 10.2°
C - Segment: 652-666 - Tilt: 7.2°
C - Segment: 692-707 - Tilt: 17.5°
C - Segment: 733-747 - Tilt: 7.3°
C - Segment: 765-777 - Tilt: 8.3°
C - Segment: 781-786 - Tilt: 34.9°
B - Segment: 399-417 - Tilt: 37.8°
B - Segment: 440-453 - Tilt: 8.3°
B - Segment: 462-475 - Tilt: 37.5°
B - Segment: 499-513 - Tilt: 25.3°
B - Segment: 516-532 - Tilt: 20.1°
B - Segment: 573-593 - Tilt: 49.6°
E - Segment: 974-989 - Tilt: 3.9°
E - Segment: 1012-1026 - Tilt: 12.0°
G - Segment: 2231-2245 - Tilt: 13.2°
G - Segment: 2276-2290 - Tilt: 14.0°
G - Segment: 2318-2333 - Tilt: 14.2°
G - Segment: 2358-2373 - Tilt: 3.6°
G - Segment: 2391-2403 - Tilt: 15.1°
G - Segment: 2407-2412 - Tilt: 40.9°
F - Segment: 1812-1829 - Tilt: 45.4°
F - Segment: 1854-1868 - Tilt: 17.6°
F - Segment: 1874-1888 - Tilt: 35.2°
F - Segment: 1989-2006 - Tilt: 45.8°
I - Segment: 1353-1367 - Tilt: 10.7°
I - Segment: 1398-1412 - Tilt: 11.7°
K - Segment: 2021-2035 - Tilt: 8.3°
K - Segment: 2061-2075 - Tilt: 12.1°
K - Segment: 2108-2122 - Tilt: 13.7°
K - Segment: 2143-2158 - Tilt: 14.8°
K - Segment: 2180-2190 - Tilt: 1.9°
K - Segment: 2194-2198 - Tilt: 37.9°
J - Segment: 1597-1615 - Tilt: 34.4°
J - Segment: 1635-1648 - Tilt: 7.4°
J - Segment: 1657-1674 - Tilt: 41.6°
J - Segment: 1693-1706 - Tilt: 32.1°
J - Segment: 1711-1727 - Tilt: 25.6°
J - Segment: 1768-1785 - Tilt: 39.9°
Structural assessment:
MAIDEN score = -169.8837
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]