Membrane domain of respiratory complex I from E. coli at 3.0 Å resolution
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00361
PDB ID: 3RKO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 53
Sequence positions:
A: 73-89|102-116
K: 5-22|33-48|58-75
J: 31-46|48-65|96-111|139-154
M: 5-21|27-44|90-106|114-130|140-155|170-186|228-248|251-268|289-306|313-328|343-358|387-408|420-437|463-481
L: 3-20|33-50|84-100|118-133|136-152|169-184|220-239|251-267|279-295|310-325|327-343|384-408|410-425|459-474|487-502|594-611
N: 13-30|35-50|76-92|104-120|126-142|159-176|205-228|237-254|271-289|297-311|328-343|371-396|409-430|451-469
Tilt angles:
A - Segment: 73-89 - Tilt: 25.9°
A - Segment: 102-116 - Tilt: 13.5°
K - Segment: 5-22 - Tilt: 26.1°
K - Segment: 33-48 - Tilt: 15.5°
K - Segment: 58-75 - Tilt: 27.3°
J - Segment: 31-46 - Tilt: 6.4°
J - Segment: 48-65 - Tilt: 16.3°
J - Segment: 96-111 - Tilt: 16.0°
J - Segment: 139-154 - Tilt: 11.8°
M - Segment: 5-21 - Tilt: 14.2°
M - Segment: 27-44 - Tilt: 32.7°
M - Segment: 90-106 - Tilt: 25.6°
M - Segment: 114-130 - Tilt: 36.0°
M - Segment: 140-155 - Tilt: 6.7°
M - Segment: 170-186 - Tilt: 18.2°
M - Segment: 228-248 - Tilt: 27.4°
M - Segment: 251-268 - Tilt: 20.3°
M - Segment: 289-306 - Tilt: 29.1°
M - Segment: 313-328 - Tilt: 19.5°
M - Segment: 343-358 - Tilt: 13.8°
M - Segment: 387-408 - Tilt: 34.7°
M - Segment: 420-437 - Tilt: 34.1°
M - Segment: 463-481 - Tilt: 36.3°
L - Segment: 3-20 - Tilt: 37.2°
L - Segment: 33-50 - Tilt: 38.5°
L - Segment: 84-100 - Tilt: 25.2°
L - Segment: 118-133 - Tilt: 25.1°
L - Segment: 136-152 - Tilt: 11.3°
L - Segment: 169-184 - Tilt: 3.9°
L - Segment: 220-239 - Tilt: 18.4°
L - Segment: 251-267 - Tilt: 19.0°
L - Segment: 279-295 - Tilt: 22.4°
L - Segment: 310-325 - Tilt: 17.1°
L - Segment: 327-343 - Tilt: 33.3°
L - Segment: 384-408 - Tilt: 25.5°
L - Segment: 410-425 - Tilt: 20.9°
L - Segment: 459-474 - Tilt: 16.3°
L - Segment: 487-502 - Tilt: 5.8°
L - Segment: 594-611 - Tilt: 32.9°
N - Segment: 13-30 - Tilt: 33.6°
N - Segment: 35-50 - Tilt: 12.4°
N - Segment: 76-92 - Tilt: 26.3°
N - Segment: 104-120 - Tilt: 27.3°
N - Segment: 126-142 - Tilt: 31.9°
N - Segment: 159-176 - Tilt: 36.9°
N - Segment: 205-228 - Tilt: 43.8°
N - Segment: 237-254 - Tilt: 35.8°
N - Segment: 271-289 - Tilt: 36.3°
N - Segment: 297-311 - Tilt: 17.1°
N - Segment: 328-343 - Tilt: 16.2°
N - Segment: 371-396 - Tilt: 41.6°
N - Segment: 409-430 - Tilt: 47.2°
N - Segment: 451-469 - Tilt: 44.7°
Structural assessment:
MAIDEN score = -366.2186
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]