Membrane domain of respiratory complex I from E. coli at 3.0 Å resolution
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00361
PDB ID: 3RKO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.4 Å
Number of TM segments = 52
Sequence positions:
A: 1731-1746|1760-1774
K: 1596-1612|1620-1634|1648-1665
J: 1787-1804|1813-1828|1832-1849|1877-1892|1924-1939
M: 619-636|638-652|704-718|724-739|754-770|779-794|905-920|922-936|957-972|995-1016|1036-1053|1073-1089
L: 6-21|29-46|88-104|114-129|141-155|164-179|224-243|245-263|285-299|305-320|333-348|377-400|414-430|451-471|492-508|591-607
N: 1129-1145|1150-1165|1193-1208|1219-1235|1244-1259|1272-1289|1317-1340|1343-1360|1384-1400|1403-1418|1438-1454|1479-1501|1521-1539|1552-1572
Tilt angles:
A - Segment: 1731-1746 - Tilt: 21.1°
A - Segment: 1760-1774 - Tilt: 12.1°
K - Segment: 1596-1612 - Tilt: 33.3°
K - Segment: 1620-1634 - Tilt: 17.0°
K - Segment: 1648-1665 - Tilt: 23.9°
J - Segment: 1787-1804 - Tilt: 38.5°
J - Segment: 1813-1828 - Tilt: 19.0°
J - Segment: 1832-1849 - Tilt: 15.1°
J - Segment: 1877-1892 - Tilt: 10.7°
J - Segment: 1924-1939 - Tilt: 8.4°
M - Segment: 619-636 - Tilt: 24.3°
M - Segment: 638-652 - Tilt: 21.8°
M - Segment: 704-718 - Tilt: 12.6°
M - Segment: 724-739 - Tilt: 21.9°
M - Segment: 754-770 - Tilt: 16.8°
M - Segment: 779-794 - Tilt: 16.1°
M - Segment: 905-920 - Tilt: 19.8°
M - Segment: 922-936 - Tilt: 9.2°
M - Segment: 957-972 - Tilt: 13.5°
M - Segment: 995-1016 - Tilt: 27.6°
M - Segment: 1036-1053 - Tilt: 29.5°
M - Segment: 1073-1089 - Tilt: 24.8°
L - Segment: 6-21 - Tilt: 27.0°
L - Segment: 29-46 - Tilt: 30.8°
L - Segment: 88-104 - Tilt: 20.2°
L - Segment: 114-129 - Tilt: 19.3°
L - Segment: 141-155 - Tilt: 9.8°
L - Segment: 164-179 - Tilt: 13.4°
L - Segment: 224-243 - Tilt: 22.9°
L - Segment: 245-263 - Tilt: 15.6°
L - Segment: 285-299 - Tilt: 15.6°
L - Segment: 305-320 - Tilt: 14.1°
L - Segment: 333-348 - Tilt: 9.4°
L - Segment: 377-400 - Tilt: 26.8°
L - Segment: 414-430 - Tilt: 24.0°
L - Segment: 451-471 - Tilt: 29.7°
L - Segment: 492-508 - Tilt: 16.1°
L - Segment: 591-607 - Tilt: 28.7°
N - Segment: 1129-1145 - Tilt: 26.8°
N - Segment: 1150-1165 - Tilt: 13.5°
N - Segment: 1193-1208 - Tilt: 16.5°
N - Segment: 1219-1235 - Tilt: 28.5°
N - Segment: 1244-1259 - Tilt: 20.3°
N - Segment: 1272-1289 - Tilt: 29.5°
N - Segment: 1317-1340 - Tilt: 42.8°
N - Segment: 1343-1360 - Tilt: 8.4°
N - Segment: 1384-1400 - Tilt: 32.6°
N - Segment: 1403-1418 - Tilt: 15.3°
N - Segment: 1438-1454 - Tilt: 19.1°
N - Segment: 1479-1501 - Tilt: 33.6°
N - Segment: 1521-1539 - Tilt: 41.0°
N - Segment: 1552-1572 - Tilt: 44.9°
Structural assessment:
MAIDEN score = -279.1411
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]