HSC at pH 4.5
Organism: Clostridium difficile
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01226
PDB ID: 3TDP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.8 Å
Number of TM segments = 30
Sequence positions:
A: 24-48|61-91|104-129|153-174|179-214|223-249
C: 24-48|62-92|104-129|153-174|179-214|223-249
B: 27-48|61-91|104-129|153-174|179-214|223-249
E: 27-48|62-91|104-129|153-175|179-214|223-249
D: 24-48|62-92|104-129|153-174|179-211|223-249
Tilt angles:
A - Segment: 24-48 - Tilt: 38.1°
A - Segment: 61-91 - Tilt: 33.4°
A - Segment: 104-129 - Tilt: 49.6°
A - Segment: 153-174 - Tilt: 44.4°
A - Segment: 179-214 - Tilt: 49.5°
A - Segment: 223-249 - Tilt: 45.4°
C - Segment: 24-48 - Tilt: 38.4°
C - Segment: 62-92 - Tilt: 34.8°
C - Segment: 104-129 - Tilt: 50.4°
C - Segment: 153-174 - Tilt: 43.4°
C - Segment: 179-214 - Tilt: 49.6°
C - Segment: 223-249 - Tilt: 46.0°
B - Segment: 27-48 - Tilt: 32.3°
B - Segment: 61-91 - Tilt: 33.2°
B - Segment: 104-129 - Tilt: 49.5°
B - Segment: 153-174 - Tilt: 44.9°
B - Segment: 179-214 - Tilt: 50.1°
B - Segment: 223-249 - Tilt: 46.7°
E - Segment: 27-48 - Tilt: 33.1°
E - Segment: 62-91 - Tilt: 39.1°
E - Segment: 104-129 - Tilt: 49.8°
E - Segment: 153-175 - Tilt: 38.4°
E - Segment: 179-214 - Tilt: 49.8°
E - Segment: 223-249 - Tilt: 45.6°
D - Segment: 24-48 - Tilt: 38.7°
D - Segment: 62-92 - Tilt: 34.7°
D - Segment: 104-129 - Tilt: 49.9°
D - Segment: 153-174 - Tilt: 43.8°
D - Segment: 179-211 - Tilt: 44.9°
D - Segment: 223-249 - Tilt: 45.2°
Structural assessment:
MAIDEN score = -647.8720
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]