HSC at pH 4.5
Organism: Clostridium difficile
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01226
PDB ID: 3TDP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.0 Å
Number of TM segments = 30
Sequence positions:
A: 25-48|62-92|105-130|154-175|180-215|224-250
C: 537-559|574-604|617-642|665-687|692-724|736-762
B: 281-303|318-349|358-386|410-433|436-468|480-506
E: 1049-1071|1086-1116|1129-1154|1178-1202|1204-1236|1248-1274
D: 793-816|830-860|873-898|921-943|948-983|992-1018
Tilt angles:
A - Segment: 25-48 - Tilt: 34.0°
A - Segment: 62-92 - Tilt: 34.4°
A - Segment: 105-130 - Tilt: 50.1°
A - Segment: 154-175 - Tilt: 42.4°
A - Segment: 180-215 - Tilt: 49.3°
A - Segment: 224-250 - Tilt: 45.5°
C - Segment: 537-559 - Tilt: 32.9°
C - Segment: 574-604 - Tilt: 33.5°
C - Segment: 617-642 - Tilt: 48.6°
C - Segment: 665-687 - Tilt: 37.5°
C - Segment: 692-724 - Tilt: 45.1°
C - Segment: 736-762 - Tilt: 44.6°
B - Segment: 281-303 - Tilt: 32.9°
B - Segment: 318-349 - Tilt: 30.4°
B - Segment: 358-386 - Tilt: 51.4°
B - Segment: 410-433 - Tilt: 40.5°
B - Segment: 436-468 - Tilt: 45.0°
B - Segment: 480-506 - Tilt: 45.1°
E - Segment: 1049-1071 - Tilt: 33.6°
E - Segment: 1086-1116 - Tilt: 34.2°
E - Segment: 1129-1154 - Tilt: 48.5°
E - Segment: 1178-1202 - Tilt: 43.3°
E - Segment: 1204-1236 - Tilt: 44.2°
E - Segment: 1248-1274 - Tilt: 42.8°
D - Segment: 793-816 - Tilt: 33.5°
D - Segment: 830-860 - Tilt: 33.4°
D - Segment: 873-898 - Tilt: 48.9°
D - Segment: 921-943 - Tilt: 38.0°
D - Segment: 948-983 - Tilt: 49.2°
D - Segment: 992-1018 - Tilt: 44.8°
Structural assessment:
MAIDEN score = -387.7963
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]