The GLIC pentameric Ligand-Gated Ion Channel Loop2-21' oxidized mutant in a locally-closed conformation (LC2 subtype)
Organism: Gloeobacter violaceus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02932
PDB ID: 3TLW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 36.6 Å
Number of TM segments = 15
Sequence positions:
A: 195-218|221-243|252-276
C: 195-218|220-243|252-277
B: 195-218|220-243|252-277
E: 194-218|221-243|252-277
D: 195-218|220-243|252-277
Tilt angles:
A - Segment: 195-218 - Tilt: 21.5°
A - Segment: 221-243 - Tilt: 9.5°
A - Segment: 252-276 - Tilt: 14.7°
C - Segment: 195-218 - Tilt: 20.5°
C - Segment: 220-243 - Tilt: 4.8°
C - Segment: 252-277 - Tilt: 16.5°
B - Segment: 195-218 - Tilt: 19.8°
B - Segment: 220-243 - Tilt: 2.2°
B - Segment: 252-277 - Tilt: 18.1°
E - Segment: 194-218 - Tilt: 19.0°
E - Segment: 221-243 - Tilt: 11.3°
E - Segment: 252-277 - Tilt: 19.7°
D - Segment: 195-218 - Tilt: 22.4°
D - Segment: 220-243 - Tilt: 5.5°
D - Segment: 252-277 - Tilt: 17.3°
Structural assessment:
MAIDEN score = -357.5273
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]