The GLIC pentameric Ligand-Gated Ion Channel Loop2-21' oxidized mutant in a locally-closed conformation (LC2 subtype)
Organism: Gloeobacter violaceus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02932
PDB ID: 3TLW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 31.5 Å
Number of TM segments = 20
Sequence positions:
A: 194-214|216-236|252-273|286-308
C: 816-836|838-859|874-895|909-930
B: 505-525|527-547|563-584|597-619
E: 1438-1458|1460-1480|1495-1516|1531-1552
D: 1127-1147|1149-1170|1184-1205|1220-1241
Tilt angles:
A - Segment: 194-214 - Tilt: 20.3°
A - Segment: 216-236 - Tilt: 8.5°
A - Segment: 252-273 - Tilt: 13.3°
A - Segment: 286-308 - Tilt: 17.1°
C - Segment: 816-836 - Tilt: 22.3°
C - Segment: 838-859 - Tilt: 12.6°
C - Segment: 874-895 - Tilt: 15.2°
C - Segment: 909-930 - Tilt: 23.2°
B - Segment: 505-525 - Tilt: 21.5°
B - Segment: 527-547 - Tilt: 8.9°
B - Segment: 563-584 - Tilt: 14.1°
B - Segment: 597-619 - Tilt: 17.7°
E - Segment: 1438-1458 - Tilt: 20.4°
E - Segment: 1460-1480 - Tilt: 7.1°
E - Segment: 1495-1516 - Tilt: 13.3°
E - Segment: 1531-1552 - Tilt: 22.7°
D - Segment: 1127-1147 - Tilt: 21.6°
D - Segment: 1149-1170 - Tilt: 11.4°
D - Segment: 1184-1205 - Tilt: 14.3°
D - Segment: 1220-1241 - Tilt: 23.4°
Structural assessment:
MAIDEN score = -327.4473
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]