Closed State of Channelrhodopsin
Organism: Chlamydomonas reinhardtii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 3UG9
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 7
Sequence positions:
A: 38-61|63-78|102-116|132-147|157-172|203-216|218-241
Tilt angles:
A - Segment: 38-61 - Tilt: 59.2°
A - Segment: 63-78 - Tilt: 32.1°
A - Segment: 102-116 - Tilt: 30.4°
A - Segment: 132-147 - Tilt: 34.2°
A - Segment: 157-172 - Tilt: 21.2°
A - Segment: 203-216 - Tilt: 23.9°
A - Segment: 218-241 - Tilt: 47.7°
Structural assessment:
MAIDEN score = -22.4065
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]