Loop deletion mutant of Salmonella typhi osmoporin (OMPC):an Outer Membrane Protein
Organism: Salmonella typhimurium
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF00267
PDB ID: 3UPG
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 15
Sequence positions:
A: 9-24|30-46|50-62|72-82|85-116|128-134|144-149|156-161|170-175|181-186|196-201|218-223|235-241|260-267|276-286
Tilt angles:
A - Segment: 9-24 - Tilt: 69.0°
A - Segment: 30-46 - Tilt: 70.0°
A - Segment: 50-62 - Tilt: 66.8°
A - Segment: 72-82 - Tilt: 54.5°
A - Segment: 85-116 - Tilt: 57.6°
A - Segment: 128-134 - Tilt: 20.0°
A - Segment: 144-149 - Tilt: 16.6°
A - Segment: 156-161 - Tilt: 11.7°
A - Segment: 170-175 - Tilt: 11.6°
A - Segment: 181-186 - Tilt: 23.3°
A - Segment: 196-201 - Tilt: 31.1°
A - Segment: 218-223 - Tilt: 27.5°
A - Segment: 235-241 - Tilt: 33.9°
A - Segment: 260-267 - Tilt: 38.9°
A - Segment: 276-286 - Tilt: 52.2°
Structural assessment:
MAIDEN score = 439.0986
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]