Sodium/Calcium Exchanger from Methanococcus jannaschii
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01699
PDB ID: 3V5S
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 10
Sequence positions:
A: 10-24|42-55|73-89|108-120|126-140|165-179|206-220|231-247|258-271|285-299
Tilt angles:
A - Segment: 10-24 - Tilt: 38.9°
A - Segment: 42-55 - Tilt: 16.3°
A - Segment: 73-89 - Tilt: 30.6°
A - Segment: 108-120 - Tilt: 34.2°
A - Segment: 126-140 - Tilt: 34.0°
A - Segment: 165-179 - Tilt: 46.4°
A - Segment: 206-220 - Tilt: 31.8°
A - Segment: 231-247 - Tilt: 29.6°
A - Segment: 258-271 - Tilt: 27.5°
A - Segment: 285-299 - Tilt: 23.4°
Structural assessment:
MAIDEN score = -31.2525
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]