Sodium/Calcium Exchanger from Methanococcus jannaschii
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01699
PDB ID: 3V5S
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 10
Sequence positions:
A: 9-24|40-54|74-89|105-118|128-142|150-167|194-207|217-232|246-259|273-286
Tilt angles:
A - Segment: 9-24 - Tilt: 40.9°
A - Segment: 40-54 - Tilt: 15.5°
A - Segment: 74-89 - Tilt: 30.2°
A - Segment: 105-118 - Tilt: 25.0°
A - Segment: 128-142 - Tilt: 21.0°
A - Segment: 150-167 - Tilt: 51.6°
A - Segment: 194-207 - Tilt: 36.3°
A - Segment: 217-232 - Tilt: 26.2°
A - Segment: 246-259 - Tilt: 19.3°
A - Segment: 273-286 - Tilt: 24.1°
Structural assessment:
MAIDEN score = -41.9579
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]