An asymmetric trimer of a glutamate transporter homologue (GLTPH)
Organism: Pyrococcus horikoshii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00375
PDB ID: 3V8G
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.3 Å
Number of TM segments = 28
Sequence positions:
A: 7-21|38-58|88-102|125-154|192-209|222-237|306-320|330-344|351-369|377-392
C: 826-841|851-873|896-913|929-957|1000-1017|1030-1046|1103-1118|1188-1203
B: 421-435|447-469|496-515|530-559|600-616|623-641|710-724|735-750|755-774|778-796
Tilt angles:
A - Segment: 7-21 - Tilt: 19.2°
A - Segment: 38-58 - Tilt: 56.9°
A - Segment: 88-102 - Tilt: 33.7°
A - Segment: 125-154 - Tilt: 26.7°
A - Segment: 192-209 - Tilt: 38.0°
A - Segment: 222-237 - Tilt: 36.3°
A - Segment: 306-320 - Tilt: 10.7°
A - Segment: 330-344 - Tilt: 34.8°
A - Segment: 351-369 - Tilt: 33.5°
A - Segment: 377-392 - Tilt: 24.4°
C - Segment: 826-841 - Tilt: 21.8°
C - Segment: 851-873 - Tilt: 56.0°
C - Segment: 896-913 - Tilt: 49.6°
C - Segment: 929-957 - Tilt: 35.5°
C - Segment: 1000-1017 - Tilt: 38.7°
C - Segment: 1030-1046 - Tilt: 25.4°
C - Segment: 1103-1118 - Tilt: 33.7°
C - Segment: 1188-1203 - Tilt: 36.0°
B - Segment: 421-435 - Tilt: 22.9°
B - Segment: 447-469 - Tilt: 58.1°
B - Segment: 496-515 - Tilt: 41.7°
B - Segment: 530-559 - Tilt: 16.9°
B - Segment: 600-616 - Tilt: 37.8°
B - Segment: 623-641 - Tilt: 47.7°
B - Segment: 710-724 - Tilt: 18.3°
B - Segment: 735-750 - Tilt: 32.9°
B - Segment: 755-774 - Tilt: 29.8°
B - Segment: 778-796 - Tilt: 33.2°
Structural assessment:
MAIDEN score = -140.6033
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]