An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin
Organism: Natronomonas pharaonis
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 3VVK
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.4 Å
Number of TM segments = 21
Sequence positions:
A: 33-54|69-91|119-135|151-169|174-192|216-236|242-262
C: 33-53|70-91|119-135|151-169|173-192|216-239|241-261
B: 33-54|69-91|119-135|151-169|173-192|216-239|241-261
Tilt angles:
A - Segment: 33-54 - Tilt: 27.8°
A - Segment: 69-91 - Tilt: 15.1°
A - Segment: 119-135 - Tilt: 0.8°
A - Segment: 151-169 - Tilt: 2.1°
A - Segment: 174-192 - Tilt: 16.5°
A - Segment: 216-236 - Tilt: 17.5°
A - Segment: 242-262 - Tilt: 10.7°
C - Segment: 33-53 - Tilt: 30.2°
C - Segment: 70-91 - Tilt: 7.6°
C - Segment: 119-135 - Tilt: 1.8°
C - Segment: 151-169 - Tilt: 3.0°
C - Segment: 173-192 - Tilt: 9.9°
C - Segment: 216-239 - Tilt: 1.2°
C - Segment: 241-261 - Tilt: 21.5°
B - Segment: 33-54 - Tilt: 29.3°
B - Segment: 69-91 - Tilt: 16.1°
B - Segment: 119-135 - Tilt: 2.5°
B - Segment: 151-169 - Tilt: 3.7°
B - Segment: 173-192 - Tilt: 11.8°
B - Segment: 216-239 - Tilt: 5.1°
B - Segment: 241-261 - Tilt: 22.4°
Structural assessment:
MAIDEN score = -161.3904
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]