An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin
Organism: Natronomonas pharaonis
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 3VVK
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 30.0 Å
Number of TM segments = 21
Sequence positions:
A: 16-37|52-74|102-118|133-152|156-175|197-219|224-245
C: 535-556|571-593|621-638|652-671|675-694|716-738|743-764
B: 276-297|312-334|362-378|393-412|416-435|457-479|484-505
Tilt angles:
A - Segment: 16-37 - Tilt: 26.8°
A - Segment: 52-74 - Tilt: 14.0°
A - Segment: 102-118 - Tilt: 1.6°
A - Segment: 133-152 - Tilt: 9.8°
A - Segment: 156-175 - Tilt: 11.6°
A - Segment: 197-219 - Tilt: 20.8°
A - Segment: 224-245 - Tilt: 15.7°
C - Segment: 535-556 - Tilt: 27.4°
C - Segment: 571-593 - Tilt: 14.3°
C - Segment: 621-638 - Tilt: 4.3°
C - Segment: 652-671 - Tilt: 9.6°
C - Segment: 675-694 - Tilt: 12.6°
C - Segment: 716-738 - Tilt: 21.5°
C - Segment: 743-764 - Tilt: 16.0°
B - Segment: 276-297 - Tilt: 26.4°
B - Segment: 312-334 - Tilt: 13.6°
B - Segment: 362-378 - Tilt: 1.8°
B - Segment: 393-412 - Tilt: 9.4°
B - Segment: 416-435 - Tilt: 13.0°
B - Segment: 457-479 - Tilt: 20.7°
B - Segment: 484-505 - Tilt: 14.8°
Structural assessment:
MAIDEN score = -61.8122
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]