MATE in complex with Br-NRF
Organism: Pyrococcus furiosus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01554
PDB ID: 3VVP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.8 Å
Number of TM segments = 12
Sequence positions:
A: 24-41|62-77|103-118|139-155|169-187|197-211|242-257|285-301|320-338|340-388|390-403|433-450
Tilt angles:
A - Segment: 24-41 - Tilt: 41.0°
A - Segment: 62-77 - Tilt: 22.5°
A - Segment: 103-118 - Tilt: 25.3°
A - Segment: 139-155 - Tilt: 30.5°
A - Segment: 169-187 - Tilt: 43.3°
A - Segment: 197-211 - Tilt: 9.7°
A - Segment: 242-257 - Tilt: 25.3°
A - Segment: 285-301 - Tilt: 37.1°
A - Segment: 320-338 - Tilt: 43.7°
A - Segment: 340-388 - Tilt: 53.6°
A - Segment: 390-403 - Tilt: 20.8°
A - Segment: 433-450 - Tilt: 36.2°
Structural assessment:
MAIDEN score = -88.3568
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]