MATE in complex with Br-NRF
Organism: Pyrococcus furiosus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01554
PDB ID: 3VVP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 30.6 Å
Number of TM segments = 10
Sequence positions:
A: 21-45|52-73|100-120|123-144|229-250|265-285|307-327|329-354|357-378|392-414
Tilt angles:
A - Segment: 21-45 - Tilt: 37.6°
A - Segment: 52-73 - Tilt: 33.3°
A - Segment: 100-120 - Tilt: 14.8°
A - Segment: 123-144 - Tilt: 27.3°
A - Segment: 229-250 - Tilt: 27.7°
A - Segment: 265-285 - Tilt: 18.7°
A - Segment: 307-327 - Tilt: 49.5°
A - Segment: 329-354 - Tilt: 41.4°
A - Segment: 357-378 - Tilt: 23.6°
A - Segment: 392-414 - Tilt: 31.4°
Structural assessment:
MAIDEN score = -87.9883
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]