Calcium pump and sarcolipin from rabbit fast twitch skeletal muscle in the E1.Mg²⁺ state
Organism: Oryctolagus cuniculus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00122
PDB ID: 3W5A
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 21
Sequence positions:
A: 60-75|86-101|263-276|288-307|765-781|785-803|835-851|897-914|933-950|967-984
C: 1999-2014
B: 1053-1068|1082-1095|1256-1270|1285-1301|1760-1775|1779-1796|1831-1845|1891-1907|1928-1944|1961-1977
Tilt angles:
A - Segment: 60-75 - Tilt: 21.2°
A - Segment: 86-101 - Tilt: 19.5°
A - Segment: 263-276 - Tilt: 29.4°
A - Segment: 288-307 - Tilt: 41.3°
A - Segment: 765-781 - Tilt: 27.0°
A - Segment: 785-803 - Tilt: 39.4°
A - Segment: 835-851 - Tilt: 29.9°
A - Segment: 897-914 - Tilt: 37.2°
A - Segment: 933-950 - Tilt: 38.0°
A - Segment: 967-984 - Tilt: 40.0°
C - Segment: 1999-2014 - Tilt: 32.3°
B - Segment: 1053-1068 - Tilt: 17.5°
B - Segment: 1082-1095 - Tilt: 25.2°
B - Segment: 1256-1270 - Tilt: 16.9°
B - Segment: 1285-1301 - Tilt: 29.7°
B - Segment: 1760-1775 - Tilt: 29.9°
B - Segment: 1779-1796 - Tilt: 38.2°
B - Segment: 1831-1845 - Tilt: 17.6°
B - Segment: 1891-1907 - Tilt: 31.5°
B - Segment: 1928-1944 - Tilt: 35.9°
B - Segment: 1961-1977 - Tilt: 39.0°
Structural assessment:
MAIDEN score = -169.9063
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]