E. coli YajR transporter
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF07690
PDB ID: 3WDO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 10
Sequence positions:
A: 12-26|113-124|134-148|174-187|214-228|253-265|281-296|306-325|336-351|372-386
Tilt angles:
A - Segment: 12-26 - Tilt: 17.7°
A - Segment: 113-124 - Tilt: 29.2°
A - Segment: 134-148 - Tilt: 13.7°
A - Segment: 174-187 - Tilt: 12.9°
A - Segment: 214-228 - Tilt: 40.0°
A - Segment: 253-265 - Tilt: 9.5°
A - Segment: 281-296 - Tilt: 31.2°
A - Segment: 306-325 - Tilt: 50.3°
A - Segment: 336-351 - Tilt: 33.7°
A - Segment: 372-386 - Tilt: 18.2°
Structural assessment:
MAIDEN score = -33.1133
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]