E. coli YajR transporter
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF07690
PDB ID: 3WDO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 10
Sequence positions:
A: 19-32|48-61|138-157|159-173|216-230|248-262|280-293|302-318|342-356|368-382
Tilt angles:
A - Segment: 19-32 - Tilt: 15.3°
A - Segment: 48-61 - Tilt: 22.6°
A - Segment: 138-157 - Tilt: 44.2°
A - Segment: 159-173 - Tilt: 25.7°
A - Segment: 216-230 - Tilt: 26.9°
A - Segment: 248-262 - Tilt: 24.8°
A - Segment: 280-293 - Tilt: 10.1°
A - Segment: 302-318 - Tilt: 33.8°
A - Segment: 342-356 - Tilt: 22.8°
A - Segment: 368-382 - Tilt: 18.7°
Structural assessment:
MAIDEN score = -32.8971
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]