Sodium binding rotor ring at pH 5.3
Organism: Fusobacterium nucleatum
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3ZK1
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 22
Sequence positions:
A: 19-44|49-75
C: 20-44|49-75
B: 19-44|49-75
E: 19-44|49-76
D: 19-44|49-75
G: 19-44|50-76
F: 19-44|49-76
I: 19-44|50-76
H: 18-44|50-76
K: 19-44|49-76
J: 19-44|50-76
Tilt angles:
A - Segment: 19-44 - Tilt: 10.2°
A - Segment: 49-75 - Tilt: 8.1°
C - Segment: 20-44 - Tilt: 18.4°
C - Segment: 49-75 - Tilt: 11.6°
B - Segment: 19-44 - Tilt: 11.6°
B - Segment: 49-75 - Tilt: 9.1°
E - Segment: 19-44 - Tilt: 13.5°
E - Segment: 49-76 - Tilt: 6.5°
D - Segment: 19-44 - Tilt: 13.9°
D - Segment: 49-75 - Tilt: 11.1°
G - Segment: 19-44 - Tilt: 11.8°
G - Segment: 50-76 - Tilt: 9.4°
F - Segment: 19-44 - Tilt: 13.1°
F - Segment: 49-76 - Tilt: 8.5°
I - Segment: 19-44 - Tilt: 9.0°
I - Segment: 50-76 - Tilt: 6.3°
H - Segment: 18-44 - Tilt: 13.5°
H - Segment: 50-76 - Tilt: 9.1°
K - Segment: 19-44 - Tilt: 9.1°
K - Segment: 49-76 - Tilt: 3.6°
J - Segment: 19-44 - Tilt: 7.9°
J - Segment: 50-76 - Tilt: 6.3°
Structural assessment:
MAIDEN score = 35.0383
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]