Sodium binding rotor ring at pH 5.3
Organism: Fusobacterium nucleatum
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3ZK1
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 22
Sequence positions:
A: 19-44|49-75
C: 197-222|227-253
B: 108-133|138-164
E: 375-400|405-431
D: 286-311|316-342
G: 553-578|583-609
F: 464-489|494-520
I: 731-756|761-787
H: 642-667|672-698
K: 909-934|939-965
J: 820-845|850-876
Tilt angles:
A - Segment: 19-44 - Tilt: 12.0°
A - Segment: 49-75 - Tilt: 7.3°
C - Segment: 197-222 - Tilt: 11.6°
C - Segment: 227-253 - Tilt: 8.3°
B - Segment: 108-133 - Tilt: 11.7°
B - Segment: 138-164 - Tilt: 6.6°
E - Segment: 375-400 - Tilt: 11.0°
E - Segment: 405-431 - Tilt: 6.4°
D - Segment: 286-311 - Tilt: 11.6°
D - Segment: 316-342 - Tilt: 7.1°
G - Segment: 553-578 - Tilt: 11.5°
G - Segment: 583-609 - Tilt: 6.8°
F - Segment: 464-489 - Tilt: 11.1°
F - Segment: 494-520 - Tilt: 8.5°
I - Segment: 731-756 - Tilt: 11.7°
I - Segment: 761-787 - Tilt: 6.3°
H - Segment: 642-667 - Tilt: 11.4°
H - Segment: 672-698 - Tilt: 7.4°
K - Segment: 909-934 - Tilt: 12.4°
K - Segment: 939-965 - Tilt: 9.2°
J - Segment: 820-845 - Tilt: 11.4°
J - Segment: 850-876 - Tilt: 7.5°
Structural assessment:
MAIDEN score = -108.0813
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]