Rotor architecture in the F(1)-c(10)-ring complex of the yeast F-ATP synthase
Organism: Saccharomyces cerevisiae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3ZRY
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 18
Sequence positions:
A: 362-378|391-403
C: 1085-1091|1170-1202|1262-1296
B: 554-594|728-741|749-766
E: 2209-2273|2328-2338|2341-2352
D: 1816-1831|1849-1879|1883-1897
G: 3102-3117
F: 2463-2471|2645-2656|2662-2681
Tilt angles:
A - Segment: 362-378 - Tilt: 48.7°
A - Segment: 391-403 - Tilt: 20.8°
C - Segment: 1085-1091 - Tilt: 24.9°
C - Segment: 1170-1202 - Tilt: 33.0°
C - Segment: 1262-1296 - Tilt: 56.1°
B - Segment: 554-594 - Tilt: 30.5°
B - Segment: 728-741 - Tilt: 31.1°
B - Segment: 749-766 - Tilt: 43.2°
E - Segment: 2209-2273 - Tilt: 29.4°
E - Segment: 2328-2338 - Tilt: 18.5°
E - Segment: 2341-2352 - Tilt: 43.6°
D - Segment: 1816-1831 - Tilt: 37.0°
D - Segment: 1849-1879 - Tilt: 43.0°
D - Segment: 1883-1897 - Tilt: 18.7°
G - Segment: 3102-3117 - Tilt: 34.6°
F - Segment: 2463-2471 - Tilt: 25.6°
F - Segment: 2645-2656 - Tilt: 13.3°
F - Segment: 2662-2681 - Tilt: 45.4°
Structural assessment:
MAIDEN score = 18.0318
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]