H-Translocating Pyrophosphatase
Organism: Vigna radiata (Mung bean)
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03030
PDB ID: 4A01
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.5 Å
Number of TM segments = 26
Sequence positions:
A: 8-23|69-85|112-130|168-186|198-214|266-282|296-314|339-357|375-392|516-533|542-563|710-726
B: 748-763|810-827|850-868|908-927|937-953|1007-1023|1038-1055|1079-1097|1116-1133|1173-1189|1191-1210|1255-1274|1282-1301|1450-1469
Tilt angles:
A - Segment: 8-23 - Tilt: 4.7°
A - Segment: 69-85 - Tilt: 9.7°
A - Segment: 112-130 - Tilt: 21.5°
A - Segment: 168-186 - Tilt: 28.1°
A - Segment: 198-214 - Tilt: 22.8°
A - Segment: 266-282 - Tilt: 8.6°
A - Segment: 296-314 - Tilt: 20.9°
A - Segment: 339-357 - Tilt: 20.2°
A - Segment: 375-392 - Tilt: 24.7°
A - Segment: 516-533 - Tilt: 28.7°
A - Segment: 542-563 - Tilt: 21.3°
A - Segment: 710-726 - Tilt: 16.3°
B - Segment: 748-763 - Tilt: 1.7°
B - Segment: 810-827 - Tilt: 18.6°
B - Segment: 850-868 - Tilt: 25.4°
B - Segment: 908-927 - Tilt: 30.1°
B - Segment: 937-953 - Tilt: 25.2°
B - Segment: 1007-1023 - Tilt: 11.1°
B - Segment: 1038-1055 - Tilt: 31.4°
B - Segment: 1079-1097 - Tilt: 24.7°
B - Segment: 1116-1133 - Tilt: 16.9°
B - Segment: 1173-1189 - Tilt: 17.9°
B - Segment: 1191-1210 - Tilt: 18.8°
B - Segment: 1255-1274 - Tilt: 26.8°
B - Segment: 1282-1301 - Tilt: 8.6°
B - Segment: 1450-1469 - Tilt: 30.6°
Structural assessment:
MAIDEN score = -233.7549
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]