Structure and function of the porb porin from disseminating N. gonorrhoeae
Organism: Neisseria gonorrhoeae
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF00267
PDB ID: 4AUI
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 19.8 Å
Number of TM segments = 40
Sequence positions:
A: 6-14|32-43|87-116|118-132|139-146|157-164|170-176|189-195|202-209|227-233|241-247|264-270|279-285|299-305
C: 622-630|649-659|703-732|734-747|755-762|773-780|786-793|805-811|818-825|843-849|856-863|880-886|895-901|915-922
B: 314-322|340-351|447-454|465-471|478-485|497-503|511-517|535-541|549-555|572-578|587-593|607-613
Tilt angles:
A - Segment: 6-14 - Tilt: 49.7°
A - Segment: 32-43 - Tilt: 56.2°
A - Segment: 87-116 - Tilt: 53.4°
A - Segment: 118-132 - Tilt: 45.8°
A - Segment: 139-146 - Tilt: 39.5°
A - Segment: 157-164 - Tilt: 39.2°
A - Segment: 170-176 - Tilt: 35.2°
A - Segment: 189-195 - Tilt: 34.5°
A - Segment: 202-209 - Tilt: 32.7°
A - Segment: 227-233 - Tilt: 29.8°
A - Segment: 241-247 - Tilt: 31.1°
A - Segment: 264-270 - Tilt: 29.7°
A - Segment: 279-285 - Tilt: 31.7°
A - Segment: 299-305 - Tilt: 35.4°
C - Segment: 622-630 - Tilt: 47.7°
C - Segment: 649-659 - Tilt: 56.1°
C - Segment: 703-732 - Tilt: 51.2°
C - Segment: 734-747 - Tilt: 47.9°
C - Segment: 755-762 - Tilt: 40.0°
C - Segment: 773-780 - Tilt: 40.2°
C - Segment: 786-793 - Tilt: 39.4°
C - Segment: 805-811 - Tilt: 36.2°
C - Segment: 818-825 - Tilt: 35.1°
C - Segment: 843-849 - Tilt: 32.1°
C - Segment: 856-863 - Tilt: 34.1°
C - Segment: 880-886 - Tilt: 31.0°
C - Segment: 895-901 - Tilt: 32.4°
C - Segment: 915-922 - Tilt: 39.4°
B - Segment: 314-322 - Tilt: 48.6°
B - Segment: 340-351 - Tilt: 54.9°
B - Segment: 447-454 - Tilt: 38.8°
B - Segment: 465-471 - Tilt: 35.4°
B - Segment: 478-485 - Tilt: 38.3°
B - Segment: 497-503 - Tilt: 35.3°
B - Segment: 511-517 - Tilt: 33.4°
B - Segment: 535-541 - Tilt: 32.1°
B - Segment: 549-555 - Tilt: 33.6°
B - Segment: 572-578 - Tilt: 31.7°
B - Segment: 587-593 - Tilt: 33.5°
B - Segment: 607-613 - Tilt: 35.7°
Structural assessment:
MAIDEN score = 977.8495
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]