Thermotoga Maritima sodium pumping membrane integral pyrophosphatase with metal ions in active site
Organism: Thermotoga maritima
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03030
PDB ID: 4AV3
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 26
Sequence positions:
A: 131-152|161-182|230-244|275-294|308-322|353-370|398-412|427-441|484-504|529-543
B: 706-720|736-750|779-793|815-828|875-890|916-931|979-993|1005-1020|1046-1060|1100-1114|1125-1142|1180-1194|1228-1249|1274-1293|1312-1325|1371-1383
Tilt angles:
A - Segment: 131-152 - Tilt: 43.6°
A - Segment: 161-182 - Tilt: 52.9°
A - Segment: 230-244 - Tilt: 28.4°
A - Segment: 275-294 - Tilt: 52.3°
A - Segment: 308-322 - Tilt: 28.6°
A - Segment: 353-370 - Tilt: 46.9°
A - Segment: 398-412 - Tilt: 36.9°
A - Segment: 427-441 - Tilt: 31.4°
A - Segment: 484-504 - Tilt: 56.4°
A - Segment: 529-543 - Tilt: 29.8°
B - Segment: 706-720 - Tilt: 38.7°
B - Segment: 736-750 - Tilt: 35.7°
B - Segment: 779-793 - Tilt: 28.4°
B - Segment: 815-828 - Tilt: 18.0°
B - Segment: 875-890 - Tilt: 23.6°
B - Segment: 916-931 - Tilt: 43.6°
B - Segment: 979-993 - Tilt: 36.9°
B - Segment: 1005-1020 - Tilt: 30.3°
B - Segment: 1046-1060 - Tilt: 32.0°
B - Segment: 1100-1114 - Tilt: 36.5°
B - Segment: 1125-1142 - Tilt: 47.7°
B - Segment: 1180-1194 - Tilt: 28.9°
B - Segment: 1228-1249 - Tilt: 53.7°
B - Segment: 1274-1293 - Tilt: 52.5°
B - Segment: 1312-1325 - Tilt: 28.1°
B - Segment: 1371-1383 - Tilt: 13.4°
Structural assessment:
MAIDEN score = -135.3534
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]