Thermotoga maritima sodium pumping membrane integral pyrophosphatase at 4 A in complex with phosphate and magnesium
Organism: Thermotoga maritima
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03030
PDB ID: 4AV6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 31
Sequence positions:
A: 6-19|41-55|64-81|108-122|160-173|202-215|261-276|283-295|333-346|378-390|408-422|451-467|501-515|541-557|565-580|627-641
B: 696-709|719-732|768-781|809-822|856-868|905-917|941-954|968-982|1023-1037|1046-1058|1098-1110|1145-1160|1182-1193|1207-1221|1270-1283
Tilt angles:
A - Segment: 6-19 - Tilt: 16.7°
A - Segment: 41-55 - Tilt: 23.8°
A - Segment: 64-81 - Tilt: 45.4°
A - Segment: 108-122 - Tilt: 36.0°
A - Segment: 160-173 - Tilt: 19.5°
A - Segment: 202-215 - Tilt: 19.2°
A - Segment: 261-276 - Tilt: 41.2°
A - Segment: 283-295 - Tilt: 16.4°
A - Segment: 333-346 - Tilt: 21.3°
A - Segment: 378-390 - Tilt: 20.9°
A - Segment: 408-422 - Tilt: 21.9°
A - Segment: 451-467 - Tilt: 38.1°
A - Segment: 501-515 - Tilt: 28.6°
A - Segment: 541-557 - Tilt: 39.9°
A - Segment: 565-580 - Tilt: 40.7°
A - Segment: 627-641 - Tilt: 31.5°
B - Segment: 696-709 - Tilt: 10.4°
B - Segment: 719-732 - Tilt: 28.1°
B - Segment: 768-781 - Tilt: 20.7°
B - Segment: 809-822 - Tilt: 31.4°
B - Segment: 856-868 - Tilt: 7.9°
B - Segment: 905-917 - Tilt: 21.7°
B - Segment: 941-954 - Tilt: 25.5°
B - Segment: 968-982 - Tilt: 30.6°
B - Segment: 1023-1037 - Tilt: 39.9°
B - Segment: 1046-1058 - Tilt: 34.0°
B - Segment: 1098-1110 - Tilt: 6.6°
B - Segment: 1145-1160 - Tilt: 26.8°
B - Segment: 1182-1193 - Tilt: 23.2°
B - Segment: 1207-1221 - Tilt: 25.0°
B - Segment: 1270-1283 - Tilt: 27.5°
Structural assessment:
MAIDEN score = -144.3715
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]