Model of the yeast F1Fo-ATP synthase dimer based on subtomogram average
Organism: Saccharomyces cerevisiae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 4B2Q
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.5 Å
Number of TM segments = 19
Sequence positions:
K: 3421-3435|3455-3472
J: 3344-3357|3382-3396
M: 3572-3585|3610-3625
L: 3497-3512|3533-3548
O: 3721-3735|3768-3781
N: 3647-3661|3689-3703
Q: 3873-3886|3920-3937
P: 3797-3810
S: 4027-4040|4067-4083
R: 3950-3963|3994-4009
Tilt angles:
K - Segment: 3421-3435 - Tilt: 21.1°
K - Segment: 3455-3472 - Tilt: 29.9°
J - Segment: 3344-3357 - Tilt: 18.0°
J - Segment: 3382-3396 - Tilt: 27.7°
M - Segment: 3572-3585 - Tilt: 26.5°
M - Segment: 3610-3625 - Tilt: 20.7°
L - Segment: 3497-3512 - Tilt: 25.6°
L - Segment: 3533-3548 - Tilt: 19.1°
O - Segment: 3721-3735 - Tilt: 17.2°
O - Segment: 3768-3781 - Tilt: 22.5°
N - Segment: 3647-3661 - Tilt: 16.7°
N - Segment: 3689-3703 - Tilt: 9.8°
Q - Segment: 3873-3886 - Tilt: 20.7°
Q - Segment: 3920-3937 - Tilt: 34.2°
P - Segment: 3797-3810 - Tilt: 23.6°
S - Segment: 4027-4040 - Tilt: 25.6°
S - Segment: 4067-4083 - Tilt: 32.1°
R - Segment: 3950-3963 - Tilt: 25.8°
R - Segment: 3994-4009 - Tilt: 21.8°
Structural assessment:
MAIDEN score = -72.8878
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]