F-type ATP synthase c-ring from Acetobacterium woodii
Organism: Acetobacterium woodii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 4BEM
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 19
Sequence positions:
A: 10-26
C: 169-185
B: 90-104
E: 338-351|379-396
D: 253-267|303-321
G: 505-519|532-549
F: 423-436|456-470
I: 667-684|693-712
H: 586-603|612-630
J: 763-779|796-814|843-859|886-902
Tilt angles:
A - Segment: 10-26 - Tilt: 49.5°
C - Segment: 169-185 - Tilt: 48.9°
B - Segment: 90-104 - Tilt: 41.9°
E - Segment: 338-351 - Tilt: 39.5°
E - Segment: 379-396 - Tilt: 42.8°
D - Segment: 253-267 - Tilt: 37.9°
D - Segment: 303-321 - Tilt: 45.9°
G - Segment: 505-519 - Tilt: 34.2°
G - Segment: 532-549 - Tilt: 42.6°
F - Segment: 423-436 - Tilt: 35.8°
F - Segment: 456-470 - Tilt: 36.4°
I - Segment: 667-684 - Tilt: 51.8°
I - Segment: 693-712 - Tilt: 47.3°
H - Segment: 586-603 - Tilt: 46.7°
H - Segment: 612-630 - Tilt: 47.9°
J - Segment: 763-779 - Tilt: 49.5°
J - Segment: 796-814 - Tilt: 43.3°
J - Segment: 843-859 - Tilt: 42.6°
J - Segment: 886-902 - Tilt: 42.1°
Structural assessment:
MAIDEN score = -24.4546
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]