Sodium proton antiporter, NapA
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00999
PDB ID: 4BWZ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.1 Å
Number of TM segments = 10
Sequence positions:
A: 28-41|51-68|84-100|117-132|147-161|179-196|261-278|289-310|322-335|354-368
Tilt angles:
A - Segment: 28-41 - Tilt: 24.0°
A - Segment: 51-68 - Tilt: 24.8°
A - Segment: 84-100 - Tilt: 29.8°
A - Segment: 117-132 - Tilt: 33.4°
A - Segment: 147-161 - Tilt: 19.1°
A - Segment: 179-196 - Tilt: 33.9°
A - Segment: 261-278 - Tilt: 41.0°
A - Segment: 289-310 - Tilt: 47.1°
A - Segment: 322-335 - Tilt: 24.4°
A - Segment: 354-368 - Tilt: 9.5°
Structural assessment:
MAIDEN score = -28.8994
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]