Cryo-EM of the Sec61-complex bound to the 80S ribosome translating a secretory substrate
Organism: Canis lupus familiaris
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 4CG5
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 10
Sequence positions:
A: 34-46|75-87|116-127|155-166|177-189|245-257|289-305|358-372
C: 69-80
B: 36-51
Tilt angles:
A - Segment: 34-46 - Tilt: 17.9°
A - Segment: 75-87 - Tilt: 36.0°
A - Segment: 116-127 - Tilt: 12.7°
A - Segment: 155-166 - Tilt: 14.5°
A - Segment: 177-189 - Tilt: 23.9°
A - Segment: 245-257 - Tilt: 12.4°
A - Segment: 289-305 - Tilt: 51.4°
A - Segment: 358-372 - Tilt: 40.3°
C - Segment: 69-80 - Tilt: 15.5°
B - Segment: 36-51 - Tilt: 37.7°
Structural assessment:
MAIDEN score = -37.4430
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]