Cryo-EM of the Sec61-complex bound to the 80S ribosome translating a secretory substrate
Organism: Canis lupus familiaris
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 4CG5
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.0 Å
Number of TM segments = 10
Sequence positions:
A: 14-30|33-63|93-111|118-139|154-173|217-234|264-285|335-352
C: 528-545
B: 482-507
Tilt angles:
A - Segment: 14-30 - Tilt: 21.2°
A - Segment: 33-63 - Tilt: 30.8°
A - Segment: 93-111 - Tilt: 15.7°
A - Segment: 118-139 - Tilt: 31.7°
A - Segment: 154-173 - Tilt: 26.6°
A - Segment: 217-234 - Tilt: 27.6°
A - Segment: 264-285 - Tilt: 48.0°
A - Segment: 335-352 - Tilt: 18.8°
C - Segment: 528-545 - Tilt: 27.6°
B - Segment: 482-507 - Tilt: 51.6°
Structural assessment:
MAIDEN score = -71.5685
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]