Cryo-em of the Sec61-complex bound to the 80s ribosome translating a membrane-inserting substrate
Organism: Canis lupus familiaris
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 4CG6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 12
Sequence positions:
A: 38-49|79-90|119-132|149-163|178-193|245-259|287-300|365-379|422-435|446-457
C: 72-86
B: 37-58
Tilt angles:
A - Segment: 38-49 - Tilt: 15.2°
A - Segment: 79-90 - Tilt: 36.6°
A - Segment: 119-132 - Tilt: 29.7°
A - Segment: 149-163 - Tilt: 19.0°
A - Segment: 178-193 - Tilt: 38.7°
A - Segment: 245-259 - Tilt: 32.9°
A - Segment: 287-300 - Tilt: 36.0°
A - Segment: 365-379 - Tilt: 27.5°
A - Segment: 422-435 - Tilt: 40.3°
A - Segment: 446-457 - Tilt: 3.7°
C - Segment: 72-86 - Tilt: 34.7°
B - Segment: 37-58 - Tilt: 65.8°
Structural assessment:
MAIDEN score = -55.1146
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]