Cryo-em of the Sec61-complex bound to the 80s ribosome translating a membrane-inserting substrate
Organism: Canis lupus familiaris
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 4CG6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 12
Sequence positions:
A: 11-25|54-66|95-109|125-139|154-169|220-234|263-276|340-354|398-412|421-432
C: 526-540
B: 482-504
Tilt angles:
A - Segment: 11-25 - Tilt: 21.4°
A - Segment: 54-66 - Tilt: 32.4°
A - Segment: 95-109 - Tilt: 27.6°
A - Segment: 125-139 - Tilt: 16.9°
A - Segment: 154-169 - Tilt: 38.1°
A - Segment: 220-234 - Tilt: 34.2°
A - Segment: 263-276 - Tilt: 34.1°
A - Segment: 340-354 - Tilt: 23.5°
A - Segment: 398-412 - Tilt: 33.7°
A - Segment: 421-432 - Tilt: 5.0°
C - Segment: 526-540 - Tilt: 30.8°
B - Segment: 482-504 - Tilt: 58.9°
Structural assessment:
MAIDEN score = -79.6216
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]