Nitrate transporter NRT1.1 from Arabidopsis thaliana
Organism: Arabidopsis thaliana
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00854
PDB ID: 4CL4
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 24
Sequence positions:
A: 11-36|48-65|82-99|104-127|146-164|183-200|253-268|294-318|320-341|366-381|400-427|438-456
B: 488-503|523-538|551-566|582-597|626-640|652-666|719-736|760-774|798-811|833-847|869-883|913-927
Tilt angles:
A - Segment: 11-36 - Tilt: 61.5°
A - Segment: 48-65 - Tilt: 44.1°
A - Segment: 82-99 - Tilt: 39.5°
A - Segment: 104-127 - Tilt: 54.3°
A - Segment: 146-164 - Tilt: 45.3°
A - Segment: 183-200 - Tilt: 46.3°
A - Segment: 253-268 - Tilt: 22.7°
A - Segment: 294-318 - Tilt: 49.0°
A - Segment: 320-341 - Tilt: 53.4°
A - Segment: 366-381 - Tilt: 17.3°
A - Segment: 400-427 - Tilt: 58.4°
A - Segment: 438-456 - Tilt: 42.5°
B - Segment: 488-503 - Tilt: 30.1°
B - Segment: 523-538 - Tilt: 17.7°
B - Segment: 551-566 - Tilt: 9.9°
B - Segment: 582-597 - Tilt: 18.1°
B - Segment: 626-640 - Tilt: 16.0°
B - Segment: 652-666 - Tilt: 25.1°
B - Segment: 719-736 - Tilt: 40.2°
B - Segment: 760-774 - Tilt: 28.7°
B - Segment: 798-811 - Tilt: 8.1°
B - Segment: 833-847 - Tilt: 26.7°
B - Segment: 869-883 - Tilt: 16.5°
B - Segment: 913-927 - Tilt: 25.4°
Structural assessment:
MAIDEN score = -120.4625
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]