3D EM map of the sodium proton antiporter MjNhaP1 from Methanocaldococcus jannaschii
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00999
PDB ID: 4D0A
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.3 Å
Number of TM segments = 12
Sequence positions:
B: 7-24|29-42|61-75|88-104|125-139|152-167|187-205|217-230|245-258|277-293|338-352|389-403
Tilt angles:
B - Segment: 7-24 - Tilt: 43.9°
B - Segment: 29-42 - Tilt: 26.5°
B - Segment: 61-75 - Tilt: 25.9°
B - Segment: 88-104 - Tilt: 27.6°
B - Segment: 125-139 - Tilt: 39.0°
B - Segment: 152-167 - Tilt: 5.0°
B - Segment: 187-205 - Tilt: 48.0°
B - Segment: 217-230 - Tilt: 35.3°
B - Segment: 245-258 - Tilt: 13.8°
B - Segment: 277-293 - Tilt: 38.4°
B - Segment: 338-352 - Tilt: 44.6°
B - Segment: 389-403 - Tilt: 14.7°
Structural assessment:
MAIDEN score = -21.0010
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]