3D EM map of the sodium proton antiporter MjNhaP1 from Methanocaldococcus jannaschii
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00999
PDB ID: 4D0A
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 13
Sequence positions:
B: 3-20|30-43|60-71|90-104|125-136|155-168|184-201|220-234|244-254|280-294|308-327|341-354|387-401
Tilt angles:
B - Segment: 3-20 - Tilt: 44.5°
B - Segment: 30-43 - Tilt: 24.7°
B - Segment: 60-71 - Tilt: 23.1°
B - Segment: 90-104 - Tilt: 34.1°
B - Segment: 125-136 - Tilt: 34.3°
B - Segment: 155-168 - Tilt: 2.8°
B - Segment: 184-201 - Tilt: 44.4°
B - Segment: 220-234 - Tilt: 32.0°
B - Segment: 244-254 - Tilt: 15.4°
B - Segment: 280-294 - Tilt: 27.0°
B - Segment: 308-327 - Tilt: 47.3°
B - Segment: 341-354 - Tilt: 41.8°
B - Segment: 387-401 - Tilt: 16.4°
Structural assessment:
MAIDEN score = -35.0231
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]