Mhp1, a nucleobase-cation-symport-1 family transporter, in a closed conformation with benzyl-hydantoin
Organism: Mycobacterium liquefaciens
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02133
PDB ID: 4D1B
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.5 Å
Number of TM segments = 12
Sequence positions:
A: 30-45|62-81|89-133|142-161|163-184|213-231|250-269|297-330|336-352|365-384|403-422|428-450
Tilt angles:
A - Segment: 30-45 - Tilt: 16.6°
A - Segment: 62-81 - Tilt: 33.3°
A - Segment: 89-133 - Tilt: 56.1°
A - Segment: 142-161 - Tilt: 32.1°
A - Segment: 163-184 - Tilt: 44.0°
A - Segment: 213-231 - Tilt: 24.9°
A - Segment: 250-269 - Tilt: 31.5°
A - Segment: 297-330 - Tilt: 64.1°
A - Segment: 336-352 - Tilt: 5.4°
A - Segment: 365-384 - Tilt: 33.4°
A - Segment: 403-422 - Tilt: 35.9°
A - Segment: 428-450 - Tilt: 43.3°
Structural assessment:
MAIDEN score = -133.9980
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]