Mhp1, a nucleobase-cation-symport-1 family transporter, in a closed conformation with benzyl-hydantoin
Organism: Mycobacterium liquefaciens
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02133
PDB ID: 4D1B
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 12
Sequence positions:
A: 22-33|52-66|91-112|134-147|153-171|203-217|243-257|294-316|327-340|355-367|398-412|418-431
Tilt angles:
A - Segment: 22-33 - Tilt: 13.9°
A - Segment: 52-66 - Tilt: 32.8°
A - Segment: 91-112 - Tilt: 56.7°
A - Segment: 134-147 - Tilt: 26.8°
A - Segment: 153-171 - Tilt: 42.8°
A - Segment: 203-217 - Tilt: 36.6°
A - Segment: 243-257 - Tilt: 27.9°
A - Segment: 294-316 - Tilt: 59.6°
A - Segment: 327-340 - Tilt: 19.9°
A - Segment: 355-367 - Tilt: 13.0°
A - Segment: 398-412 - Tilt: 40.6°
A - Segment: 418-431 - Tilt: 32.3°
Structural assessment:
MAIDEN score = -59.5039
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]