Tri peptide bound POT family peptide transporter
Organism: Streptococcus thermophilus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00854
PDB ID: 4D2D
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.2 Å
Number of TM segments = 14
Sequence positions:
A: 16-33|60-78|84-100|113-130|149-165|181-197|220-237|250-267|285-303|325-340|354-370|390-408|425-440|457-472
Tilt angles:
A - Segment: 16-33 - Tilt: 34.9°
A - Segment: 60-78 - Tilt: 30.1°
A - Segment: 84-100 - Tilt: 11.3°
A - Segment: 113-130 - Tilt: 31.9°
A - Segment: 149-165 - Tilt: 20.1°
A - Segment: 181-197 - Tilt: 12.7°
A - Segment: 220-237 - Tilt: 26.8°
A - Segment: 250-267 - Tilt: 23.0°
A - Segment: 285-303 - Tilt: 37.7°
A - Segment: 325-340 - Tilt: 22.8°
A - Segment: 354-370 - Tilt: 21.1°
A - Segment: 390-408 - Tilt: 35.0°
A - Segment: 425-440 - Tilt: 17.3°
A - Segment: 457-472 - Tilt: 13.0°
Structural assessment:
MAIDEN score = -111.7443
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]