Tri peptide bound POT family peptide transporter
Organism: Streptococcus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00854
PDB ID: 4D2D
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 31.8 Å
Number of TM segments = 14
Sequence positions:
A: 11-32|52-73|75-99|105-125|144-165|170-191|211-232|243-266|273-301|309-330|344-365|376-399|406-427|436-457
Tilt angles:
A - Segment: 11-32 - Tilt: 24.2°
A - Segment: 52-73 - Tilt: 34.5°
A - Segment: 75-99 - Tilt: 30.8°
A - Segment: 105-125 - Tilt: 14.5°
A - Segment: 144-165 - Tilt: 17.6°
A - Segment: 170-191 - Tilt: 16.2°
A - Segment: 211-232 - Tilt: 20.5°
A - Segment: 243-266 - Tilt: 24.3°
A - Segment: 273-301 - Tilt: 46.1°
A - Segment: 309-330 - Tilt: 24.7°
A - Segment: 344-365 - Tilt: 24.7°
A - Segment: 376-399 - Tilt: 39.2°
A - Segment: 406-427 - Tilt: 25.3°
A - Segment: 436-457 - Tilt: 18.4°
Structural assessment:
MAIDEN score = -97.5319
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]