NavRh, a voltage-gated sodium channel
Organism: Alpha proteobacterium
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00520
PDB ID: 4DXW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 19
Sequence positions:
A: 13-29|39-57|129-150|197-215
C: 13-28|39-56|129-150|197-215
B: 13-28|39-57|79-94|100-116|129-150|197-215
D: 40-57|79-92|100-116|129-150|197-215
Tilt angles:
A - Segment: 13-29 - Tilt: 24.7°
A - Segment: 39-57 - Tilt: 34.9°
A - Segment: 129-150 - Tilt: 46.2°
A - Segment: 197-215 - Tilt: 39.0°
C - Segment: 13-28 - Tilt: 21.0°
C - Segment: 39-56 - Tilt: 44.5°
C - Segment: 129-150 - Tilt: 47.1°
C - Segment: 197-215 - Tilt: 39.4°
B - Segment: 13-28 - Tilt: 21.8°
B - Segment: 39-57 - Tilt: 34.3°
B - Segment: 79-94 - Tilt: 27.2°
B - Segment: 100-116 - Tilt: 38.2°
B - Segment: 129-150 - Tilt: 46.4°
B - Segment: 197-215 - Tilt: 38.9°
D - Segment: 40-57 - Tilt: 41.5°
D - Segment: 79-92 - Tilt: 30.5°
D - Segment: 100-116 - Tilt: 36.2°
D - Segment: 129-150 - Tilt: 47.5°
D - Segment: 197-215 - Tilt: 39.6°
Structural assessment:
MAIDEN score = -211.7790
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]