NavRh, a voltage-gated sodium channel
Organism: Alpha proteobacterium
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00520
PDB ID: 4DXW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.4 Å
Number of TM segments = 19
Sequence positions:
A: 11-28|36-56|111-133|177-197
C: 437-454|460-480|534-556|600-620
B: 220-236|244-263|282-297|302-319|332-353|398-418
D: 653-671|682-696|702-719|732-755|798-818
Tilt angles:
A - Segment: 11-28 - Tilt: 19.1°
A - Segment: 36-56 - Tilt: 35.2°
A - Segment: 111-133 - Tilt: 40.8°
A - Segment: 177-197 - Tilt: 43.1°
C - Segment: 437-454 - Tilt: 21.8°
C - Segment: 460-480 - Tilt: 34.6°
C - Segment: 534-556 - Tilt: 38.0°
C - Segment: 600-620 - Tilt: 39.7°
B - Segment: 220-236 - Tilt: 21.8°
B - Segment: 244-263 - Tilt: 39.4°
B - Segment: 282-297 - Tilt: 27.2°
B - Segment: 302-319 - Tilt: 30.0°
B - Segment: 332-353 - Tilt: 43.7°
B - Segment: 398-418 - Tilt: 39.8°
D - Segment: 653-671 - Tilt: 33.9°
D - Segment: 682-696 - Tilt: 24.4°
D - Segment: 702-719 - Tilt: 32.1°
D - Segment: 732-755 - Tilt: 39.2°
D - Segment: 798-818 - Tilt: 42.1°
Structural assessment:
MAIDEN score = -154.0637
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]