NavAb voltage-gated sodium channel (wild-type, 3.2 A)
Organism: Arcobacter butzleri
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00520
PDB ID: 4EKW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.1 Å
Number of TM segments = 8
Sequence positions:
A: 1008-1024|1203-1217
B: 1013-1026|1051-1065|1071-1086|1104-1117|1119-1142|1203-1216
Tilt angles:
A - Segment: 1008-1024 - Tilt: 39.9°
A - Segment: 1203-1217 - Tilt: 37.2°
B - Segment: 1013-1026 - Tilt: 33.5°
B - Segment: 1051-1065 - Tilt: 33.0°
B - Segment: 1071-1086 - Tilt: 6.5°
B - Segment: 1104-1117 - Tilt: 19.8°
B - Segment: 1119-1142 - Tilt: 57.7°
B - Segment: 1203-1216 - Tilt: 41.8°
Structural assessment:
MAIDEN score = -38.6538
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]