NavAb voltage-gated sodium channel (wild-type, 3.2 A)
Organism: Arcobacter butzleri
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00520
PDB ID: 4EKW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 37.5 Å
Number of TM segments = 6
Sequence positions:
A: 8-34|192-217
B: 230-253|259-284|286-372|410-436
Tilt angles:
A - Segment: 8-34 - Tilt: 25.1°
A - Segment: 192-217 - Tilt: 29.7°
B - Segment: 230-253 - Tilt: 18.0°
B - Segment: 259-284 - Tilt: 30.5°
B - Segment: 286-372 - Tilt: 48.8°
B - Segment: 410-436 - Tilt: 29.9°
Structural assessment:
MAIDEN score = -74.5618
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]