Bacterial dicarboxylate/sodium symporter
Organism: Vibrio cholerae
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00939
PDB ID: 4F35
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 15
Sequence positions:
C: 20-34|96-111|183-205|225-242|261-273|293-311|314-329|409-424|436-449
D: 21-35|91-105|270-285|290-306|318-333|379-393
Tilt angles:
C - Segment: 20-34 - Tilt: 25.9°
C - Segment: 96-111 - Tilt: 31.1°
C - Segment: 183-205 - Tilt: 49.4°
C - Segment: 225-242 - Tilt: 45.2°
C - Segment: 261-273 - Tilt: 13.7°
C - Segment: 293-311 - Tilt: 14.4°
C - Segment: 314-329 - Tilt: 47.8°
C - Segment: 409-424 - Tilt: 15.3°
C - Segment: 436-449 - Tilt: 29.7°
D - Segment: 21-35 - Tilt: 30.0°
D - Segment: 91-105 - Tilt: 36.5°
D - Segment: 270-285 - Tilt: 12.0°
D - Segment: 290-306 - Tilt: 47.5°
D - Segment: 318-333 - Tilt: 45.6°
D - Segment: 379-393 - Tilt: 41.3°
Structural assessment:
MAIDEN score = -26.4123
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]