Bacterial dicarboxylate/sodium symporter
Organism: Vibrio cholerae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00939
PDB ID: 4F35
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 18
Sequence positions:
C: 435-452|459-473|476-489|504-519|664-680|688-705|716-731|746-764|776-791|796-807
D: 78-92|160-186|207-222|230-242|261-274|282-296|379-393|402-414
Tilt angles:
C - Segment: 435-452 - Tilt: 43.1°
C - Segment: 459-473 - Tilt: 23.3°
C - Segment: 476-489 - Tilt: 6.5°
C - Segment: 504-519 - Tilt: 43.5°
C - Segment: 664-680 - Tilt: 25.4°
C - Segment: 688-705 - Tilt: 49.3°
C - Segment: 716-731 - Tilt: 50.4°
C - Segment: 746-764 - Tilt: 35.2°
C - Segment: 776-791 - Tilt: 35.8°
C - Segment: 796-807 - Tilt: 22.0°
D - Segment: 78-92 - Tilt: 35.4°
D - Segment: 160-186 - Tilt: 53.3°
D - Segment: 207-222 - Tilt: 57.3°
D - Segment: 230-242 - Tilt: 15.7°
D - Segment: 261-274 - Tilt: 30.2°
D - Segment: 282-296 - Tilt: 42.7°
D - Segment: 379-393 - Tilt: 13.4°
D - Segment: 402-414 - Tilt: 17.6°
Structural assessment:
MAIDEN score = -53.5636
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]