Open Channel Conformation of a Voltage Gated Sodium Channel
Organism: Magnetococcus marinus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00520
PDB ID: 4F4L
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.5 Å
Number of TM segments = 4
Sequence positions:
A: 64-85
C: 243-265
B: 150-172
D: 332-354
Tilt angles:
A - Segment: 64-85 - Tilt: 40.3°
C - Segment: 243-265 - Tilt: 37.5°
B - Segment: 150-172 - Tilt: 39.6°
D - Segment: 332-354 - Tilt: 40.0°
Structural assessment:
MAIDEN score = -26.1643
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]