Clostridium perfringens NetB toxin in the membrane inserted form
Organism: Clostridium perfringens
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF07968
PDB ID: 4H56
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.0 Å
Number of TM segments = 14
Sequence positions:
A: 100-108|111-120
C: 634-642|645-654
B: 367-375|378-387
E: 1168-1177|1179-1188
D: 901-910|912-921
G: 1702-1711|1713-1722
F: 1435-1444|1446-1455
Tilt angles:
A - Segment: 100-108 - Tilt: 29.2°
A - Segment: 111-120 - Tilt: 32.9°
C - Segment: 634-642 - Tilt: 32.7°
C - Segment: 645-654 - Tilt: 34.4°
B - Segment: 367-375 - Tilt: 30.1°
B - Segment: 378-387 - Tilt: 32.3°
E - Segment: 1168-1177 - Tilt: 34.2°
E - Segment: 1179-1188 - Tilt: 38.1°
D - Segment: 901-910 - Tilt: 34.1°
D - Segment: 912-921 - Tilt: 37.3°
G - Segment: 1702-1711 - Tilt: 30.5°
G - Segment: 1713-1722 - Tilt: 35.5°
F - Segment: 1435-1444 - Tilt: 32.6°
F - Segment: 1446-1455 - Tilt: 37.3°
Structural assessment:
MAIDEN score = 325.8021
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]