Entire respiratory complex I from Thermus thermophilus
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00361
PDB ID: 4HEA
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.6 Å
Number of TM segments = 61
Sequence positions:
A: 2556-2573|2610-2625|2640-2656
H: 4430-4450|4499-4518|4537-4551|4574-4590|4610-4631|4659-4683|4692-4707|4724-4741|4752-4768
K: 2829-2844|2847-2862|2880-2895
J: 2670-2685|2687-2704|2713-2731|2750-2765|2800-2816
M: 3547-3564|3594-3610|3619-3634|3639-3654|3668-3683|3718-3738|3749-3763|3782-3798|3807-3822|3833-3849|3879-3904|3912-3929|3953-3970
L: 2948-2964|2990-3007|3023-3039|3042-3058|3074-3090|3124-3144|3154-3172|3184-3201|3214-3229|3232-3249|3286-3311|3317-3332|3363-3380|3407-3423|3504-3520
N: 4015-4032|4049-4065|4075-4090|4095-4111|4124-4140|4167-4187|4197-4213|4222-4239|4246-4261|4270-4286|4314-4339|4349-4366|4390-4406
Tilt angles:
A - Segment: 2556-2573 - Tilt: 37.4°
A - Segment: 2610-2625 - Tilt: 13.1°
A - Segment: 2640-2656 - Tilt: 13.5°
H - Segment: 4430-4450 - Tilt: 42.5°
H - Segment: 4499-4518 - Tilt: 47.5°
H - Segment: 4537-4551 - Tilt: 27.5°
H - Segment: 4574-4590 - Tilt: 18.4°
H - Segment: 4610-4631 - Tilt: 29.4°
H - Segment: 4659-4683 - Tilt: 45.7°
H - Segment: 4692-4707 - Tilt: 17.9°
H - Segment: 4724-4741 - Tilt: 15.0°
H - Segment: 4752-4768 - Tilt: 16.7°
K - Segment: 2829-2844 - Tilt: 16.8°
K - Segment: 2847-2862 - Tilt: 15.1°
K - Segment: 2880-2895 - Tilt: 7.4°
J - Segment: 2670-2685 - Tilt: 24.3°
J - Segment: 2687-2704 - Tilt: 24.2°
J - Segment: 2713-2731 - Tilt: 15.7°
J - Segment: 2750-2765 - Tilt: 12.4°
J - Segment: 2800-2816 - Tilt: 12.9°
M - Segment: 3547-3564 - Tilt: 26.5°
M - Segment: 3594-3610 - Tilt: 17.5°
M - Segment: 3619-3634 - Tilt: 9.7°
M - Segment: 3639-3654 - Tilt: 8.8°
M - Segment: 3668-3683 - Tilt: 15.6°
M - Segment: 3718-3738 - Tilt: 22.8°
M - Segment: 3749-3763 - Tilt: 24.2°
M - Segment: 3782-3798 - Tilt: 27.2°
M - Segment: 3807-3822 - Tilt: 4.0°
M - Segment: 3833-3849 - Tilt: 19.9°
M - Segment: 3879-3904 - Tilt: 37.5°
M - Segment: 3912-3929 - Tilt: 28.6°
M - Segment: 3953-3970 - Tilt: 25.5°
L - Segment: 2948-2964 - Tilt: 14.6°
L - Segment: 2990-3007 - Tilt: 23.6°
L - Segment: 3023-3039 - Tilt: 20.8°
L - Segment: 3042-3058 - Tilt: 9.7°
L - Segment: 3074-3090 - Tilt: 8.9°
L - Segment: 3124-3144 - Tilt: 16.3°
L - Segment: 3154-3172 - Tilt: 17.6°
L - Segment: 3184-3201 - Tilt: 23.0°
L - Segment: 3214-3229 - Tilt: 15.5°
L - Segment: 3232-3249 - Tilt: 28.2°
L - Segment: 3286-3311 - Tilt: 38.0°
L - Segment: 3317-3332 - Tilt: 26.3°
L - Segment: 3363-3380 - Tilt: 42.7°
L - Segment: 3407-3423 - Tilt: 14.3°
L - Segment: 3504-3520 - Tilt: 20.8°
N - Segment: 4015-4032 - Tilt: 25.2°
N - Segment: 4049-4065 - Tilt: 14.8°
N - Segment: 4075-4090 - Tilt: 16.5°
N - Segment: 4095-4111 - Tilt: 20.1°
N - Segment: 4124-4140 - Tilt: 7.8°
N - Segment: 4167-4187 - Tilt: 22.5°
N - Segment: 4197-4213 - Tilt: 18.8°
N - Segment: 4222-4239 - Tilt: 25.5°
N - Segment: 4246-4261 - Tilt: 8.0°
N - Segment: 4270-4286 - Tilt: 11.8°
N - Segment: 4314-4339 - Tilt: 31.2°
N - Segment: 4349-4366 - Tilt: 31.5°
N - Segment: 4390-4406 - Tilt: 25.6°
Structural assessment:
MAIDEN score = -380.6848
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]